Publications 2013

Amerongen, H. van & Croce, R. (2013). Light harvesting in photosystem II. Photosynthesis Research, 116(2-3), 251-263. 10.1007/s11120-013-9824-3

Anna, J.M (Extern), Scholes, G.D. (Extern) & Grondelle, R. van (2013). A little coherence in photosynthetic light harvesting. BioScience, 64, 14-25. 

Berera, R., Gwizdala, M.S., Stokkum, I.H.M. van, Kirilovsky, D. & Grondelle, R. van (2013). Excited States of the Inactive and Active Forms of the Orange Carotenoid Protein. Journal of Physical Chemistry B, 117, 9121-9128. 10.1021/jp307420p

Chmeliov, J. Valkunas, L. Kruger, T.P.J. Ilioaia, C. & Grondelle, R. van (2013). Fluorescence blinking of single major light-harvesting complexes. New Journal of Physics, 15:085007. 10.1088/1367-2630/15/8/085007

Croce, R. & Amerongen, H. van (2013). Light-harvesting in photosystem I. Photosynthesis Research, 116(2-3), 153-166. 10.1007/s11120-013-9838-x

Curutchet, C., Novoderezhkin, V.I., Kongsted, J., Munoz-Losa, A., Grondelle, R. van, Scholes, G.D. & Menucci, B. (2012). Energy Flow in the Cryptophyte PE545 Antenna is Directed by Bilin Pigment Conformation. Journal of Physical Chemistry B. 10.1021/jp305033d

Ferretti, M., Novoderezhkin, V.I., Romero, E., Augulis, R., Pandit, A., Zigmantas, D. & Grondelle, R. van (2013). The nature of coherences in the B820 bacteriochlorophyll dimer revealed by two-dimensional electronic spectroscopy. Physical Chemistry Chemical Physics - PCCP. 10.1039/c3cp54634a

Grondelle, R. van (2013). Autobiography of Rienk van Grondelle. Journal of Physical Chemistry B, 117(38), 10947-10947. 10.1021/jp4068476

Kennis, J.T.M. & Mathes, T. (2013). Molecular eyes: proteins that transform light into biological information. Interface Focus, 3:UNSP 20130005(5). 10.1098/rsfs.2013.0005

Kennis, J.T.M., Stokkum, I.H.M. van, Peterson, D.S., Pandit, A. & Wachter, R.M. (2013). Ultrafast Proton Shuttling in Psammocora Cyan Fluorescent Protein. Journal of Physical Chemistry B, 117, 11134-11143. 10.1021/jp401114e

Kloz, M. (2013, Februari 11). Carotenoids and Life Femtoseconds and Light. Transient absorption and femtosecond stimulated Raman spectroscopy of free and bound carotenoids. VU Vrije Universiteit. Prom./coprom.: prof. dr. R. van Grondelle & dr. J.T.M. Kennis.

Kouril, R., Wientjes, I.E., Bultema, J.B., Croce, R. & Boekema, E.J. (2013). High-light vs. low-light: Effect of light acclimation on photosystem II composition and organization in Arabidopsis thaliana. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1827, 411-419. 10.1016/j.bbabio.2012.12.003

Lambrev, P.H., Miloslavina, Y., Stahl, A.D., Michalik, M, Susz, A., Tworzydlo, J., Fiedor, J., Huhn, G, Groot, M.L., Grondelle, R. van, Garab, G. & Fiedor, L. (2013). Excitation Energy Trapping and Dissipation by Ni-Substituted Bacteriochlorophyll a in Reconstituted LH1 Complexes from Rhodospirillum rubrum. Journal of Physical Chemistry B, 117(38), 11260-11271. 10.1021/jp4020977

Liguori, N., Roy, L.M., Opacic, M., Durand, G. & Croce, R. (2013). Regulation of Light Harvesting in the Green Alga Chlamydomonas reinhardtii: The C-Terminus of LHCSR Is the Knob of a Dimmer Switch. Journal of the American Chemical Society, 135(49), 18339-18342. 10.1021/ja4107463

Ly, H.K., Harnisch, F., Hong, S.F., Schroeder, U., Hildebrandt, P. & Millo, D. (2013). Unraveling the Interfacial Electron Transfer Dynamics of Electroactive Microbial Biofilms Using Surface-Enhanced Raman Spectroscopy. ChemSusChem, 6(3), 487-492. 10.1002/cssc.201200626

Ly, H.K., Harnisch, F., Hong, S.F., Schroeder, U. & Hildebrandt, P. (2013). Unraveling the Interfacial Electron Transfer Dynamics of Electroactive Microbial Biofilms Using Surface-Enhanced Raman Spectroscopy. ChemSusChem, 6(3), 487-492. 10.1002/cssc.201200626

Maiuri, M., Snellenburg, J.J., Stokkum, I.H.M. van, Pillai, S. (Extern), Carter, K.W., Gust, D., Moore, T.A., Moore, A.L. & Grondelle, R. van (2013). Ultrafast Energy Transfer and Excited State Coupling in an Artificial Photosynthetic Antenna. Journal of Physical Chemistry B, 117(46), 14183-14190. 10.1021/jp401073w

Mehlhorn, J., Steinocher, H., Beck, S., Kennis, J.T.M., Hegemann, P. & Mathes, T. (2013). A Set of Engineered Escherichia coli Expression Strains for Selective Isotope and Reactivity Labeling of Amino Acid Side Chains and Flavin Cofactors. PLoS One, 8:UNSP e79006(11). 10.1371/journal.pone.0079006

Mendes Pinto, M.M. (2013, Oktober 16). Insights into molecular mechanisms of carotenoid properties. VU Vrije Universiteit. Prom./coprom.: prof. dr. B.H. Robert.

Nieder, J.B., Stojkovic, E.A, Moffat, K., Forest, K.T., Lamparter, T., Bittl, R. & Kennis, J.T.M. (2013). Pigment-Protein Interactions in Phytochromes Probed by Fluorescence Line Narrowing Spectroscopy. Journal of Physical Chemistry B, 117(48), 14940-14950. 10.1021/jp409110q

Novoderezhkin, V. & Grondelle, R. van (2013). Spectra and Dynamics in the B800 Antenna: Comparing Hierarchical Equations, Redfield and Forster Theories. Journal of Physical Chemistry B, 117(38), 11076-11090. 10.1021/jp400957t

Pillai, S., Ravensbergen, J., Antoniuk-Pablant, A., Sherman, B.D., Grondelle, R. van, Frese, R.N., Moore, T.A., Gust, D., Moore, A.L. & Kennis, J.T.M. (2013). Carotenoids as electron or excited-state energy donors in artificial photosynthesis: an ultrafast investigation of a carotenoporphyrin and a carotenofullerene dyad. Physical Chemistry Chemical Physics - PCCP, 15(13), 4775-4784. 10.1039/c3cp50364j

Puetz, S.L., Meraz, J., Varela, A., Igova, B., Baker, A., Schirmer, A., Stojkovic, E.A & Kennis, J.T.M. (2013). Structure-based engineering of an infrared fluorescent protein marker. FASEB Journal, 27(576.4).

Snellenburg, J.J., Dekker, J.P., Grondelle, R. van & Stokkum, I.H.M. van (2013). Functional Compartmental Modeling of the Photosystems in the Thylakoid Membrane at 77 K. Journal of Physical Chemistry B, 117(38), 11363-11371. 10.1021/jp4031283

Stahl, A.D., Di Donato, M., Stokkum, I.H.M. van, Grondelle, R. van & Groot, M.L. (2013). Closed Reaction Centers of PS1 Still Can Perform the First Steps of Charge Separation. A Mid IR Pump Probe Study with fs Resolution. In Photosynthesis Research for Food, Fuel and the Future (pp. 127-130). Springer Berlin Heidelberg.

Stokkum, I.H.M. van, Desquilbet, T.E., Weij - de Wit, C.D. van der, Snellenburg, J.J., Grondelle, R. van, Thomas, J-C., Dekker, J.P. & Robert, B.H. (2013). Energy Transfer and Trapping in Red-Chlorophyll-Free Photosystem I from Synechococcus WH 7803. Journal of Physical Chemistry B, 117(38), 11176-11183. 10.1021/jp401364a

Sznee, K., Crouch, L.I., Jones, M.J. (ESI), Dekker, J.P. & Frese, R.N. (2013). Variation in supramolecular organization of the photosynthetic membrane of Rhodobacter sphaeroides. Photosynthesis Research, 1-14. 10.1007/s11120-013-9949-4

Tian, L., Stokkum, I.H.M. van, Koehorst, R.B.M. & Amerongen, H. van (2013). Light Harvesting and Blue-Green Light Induced Non-Photochemical Quenching in Two Different C-Phycocyanin Mutants of Synechocystis PCC 6803. Journal of Physical Chemistry B, 117, 11000-11006. 10.1021/jp309570u

Utesch, T., Millo, D., Castro, M.A., Hildebrandt, P., Zebger, I. & Mroginski, M.A. (2013). Effect of the Protonation Degree of a Self-Assembled Monolayer on the Immobilization Dynamics of a [NiFe] Hydrogenase. Langmuir, 29(2), 673-682. 10.1021/la303635q

Vengris, M., Larsen, D.S., Valkunas, L., Kodis, G., Herrero, C., Gust, D., Moore, T.A., Moore, A.L. & Grondelle, R. van (2013). Separating Annihilation and Excitation Energy Transfer Dynamics in Light Harvesting Systems. Journal of Physical Chemistry B, 117(38), 11372-11382. 10.1021/jp403301c

Wahadoszamen, M.D., Ghazaryan, A., Cingil, E.H., Mane Ara, A., Buchel, C., Grondelle, R. van & Berera, R. (2013). Stark fluorescence spectroscopy reveals two emitting sites in the dissipative state of FCP antennas. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1837, 193-200. 10.1016/j.bbabio.2013.09.001

Wientjes, I.E., Drop, B.A., Kouril, R., Boekema, E.J. & Croce, R. (2013). During State 1 to State 2 Transition in Arabidopsis thaliana, the Photosystem II Supercomplex Gets Phosphorylated but Does Not Disassemble. Journal of Biological Chemistry, 288(46), 32821-32826. 10.1074/jbc.M113.511691
 

 
Wientjes, I.E., Amerongen, H. van & Croce, R. (2013). LHCII is an antenna of both photosystems in all light conditions. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1827, 420-426. 10.1016/j.bbabio.2012.12.009
 

 
Wientjes, I.E., Kouril, R., Boekema, E.J. & Croce, R. (2013). Photosystem II supercomplex organization does not change during state transitions in higher plant. In Photosystem II supercomplex organization does not change during state transitions in higher plant.
 

 
Wientjes, I.E., Amerongen, H. van & Croce, R. (2013). Quantum yield of charge separation in Photosystem II: functional effect of changes in the antenna size upon light acclimation. In Quantum yield of charge separation in Photosystem II: functional effect of changes in the antenna size upon light acclimation.
 

 
Williams, R.M., Van Anh, N. & Stokkum, I.H.M. van (2013). Triplet formation by charge recombination in thin film blends of perylene red and pyrene: developing a target model for the photophysics of organic photovoltaic materials. Journal of Physical Chemistry B, 11239-11248. 10.1021/jp402086p
 

 
Zhu, J., Stokkum, I.H.M. van, Paparelli, L., Jones, M.R. & Groot, M.L. (2013). Early Bacteriopheophytin Reduction in Charge Separation in Reaction Centers of Rhodobacter sphaeroides. Biophysical Journal, 104(11), 2493-2502. 10.1016/j.bpj.2013.04.026
 

 
Zhu, J., Hospes, M., Arents, J., Kennis, J.T.M., Stokkum, I.H.M. van, Hellingwerf, K.J. & Groot, M.L. (2013). Photoionization and Electron Radical Recombination Dynamics in Photoactive Yellow Protein Investigated by Ultrafast Spectroscopy in the Visible and Near-Infrared Spectral Region. Journal of Physical Chemistry B, 117(38), 11042-11048. 10.1021/jp311906f
 

 
Zhu, J., Mathes, T., Stahl, A.D., Kennis, J.T.M. & Groot, M.L. (2013). Lower frequency region mid-infrared spectroscopy by chirped pulse upconversion. In XVIIIth International Conference on Ultrafast Phenomena. EDP Sciences.
 

 
Zhu, J., Paparelli, L., Arents, J., Hellingwerf, K.J., Kennis, J.T.M., Stokkum, I.H.M. van & Groot, M.L. (2013). Ultrafast geminate electron-radical recombination dynamics in photoactive yellow protein. In XVIIIth International Conference on Ultrafast Phenomena (pp. 07010). EDP Sciences.