Publications 2011

Boehm, M., Romero Mesa, E., Reisinger, V, Yu, J., Komenda, J., Eichacker, L.A., Dekker, J.P. & Nixon, P.J. (2011). Investigating the early stages of photosystem II assembly in Synechocystis sp. PCC 6803: Isolation of CP147 and CP143 complexes. Journal of Biological Chemistry, A 115, 3947-3956.

Boontje, N., Merkus, D., Zaremba, R., Versteilen, A.M.G., Waard, M. de, Mearini, G., Beer, V.J. de, Carrier, L., Walker, L.A., Niessen, H.W.M., Dobrev, D., Stienen, G.J.M., Duncker, D.J. & Velden, J. van der (2011). Enhanced myofilament responsiveness upon β-adrenergic stimulation in post-infarct remodeled myocardium. Journal of Molecular and Cellular Cardiology, 50, 487-499.

Caffarri, S., Broess, K., Croce, R. & Amerongen, H. van (2011). Excitation Energy Transfer and Trapping in Higher Plant Photosystem II Complexes with Different Antenna Sizes. Biophysical Journal, 100(9), 2094-2103.

Chen, X., Larsen, D.S., Bradforth, S.E. & Stokkum, I.H.M. van (2011). Broadband spectral probing revealing ultrafast photochemical branching after ultraviolet excitation of the aqueous phenolate anion. Journal of Physical Chemistry A, 115(16), 3807-3819.

Cohen Stuart, T.A., Vengris, M., Novoderezhkin, V.I., Cogdell, R.J., Hunter, C.N. & Grondelle, R. van (2011). Direct Visualization of Exciton Reequilibration in the LH1 and LH2 Complexes of Rhodobacter sphaeroides by Multipulse Spectroscopy. Biophysical Journal, 100(9), 2226-2233.

Croce, R. & Amerongen, H. van (2011). Light-harvesting and structural organization of Photosystem II: from individual complexes to thylakoid membrane. Journal of Photochemistry and Photobiology B. Biology, 104, 142-153.

Croce, R. & Amerongen, H. van (2011). Light-harvesting and structural organization of Photosystem II: From individual complexes to thylakoid membrane. Journal of Photochemistry and Photobiology B. Biology, 104(1-2), 142-153.

Di Donato, M., Stahl, A.D., Stokkum, I.H.M. van, Grondelle, R. van & Groot, M.L. (2011). Cofactors Involved in Light-Driven Charge Separation in Photosystem I Identified by Subpicosecond Infrared Spectroscopy. Biochemistry, 50(4), 480-490.

Di Donato, M., Wilderen, L.J.G.W. van, Stokkum, I.H.M. van, Cohen Stuart, T.A., Kennis, J.T.M., Hellingwerf, K.J., Grondelle, R. van & Groot, M.L. (2011). Proton transfer events in GFP. Physical Chemistry Chemical Physics - PCCP, 13(36), 16295-16305.

Drop, B.A., Webber-Birungi, M., Fusetti, F., Kouril, R., Redding, K.E., Boekema, E.J. & Croce, R. (2011). Photosystem I of Chlamydomonas reinhardtii Contains Nine Light-harvesting Complexes (Lhca) Located on One Side of the Core. Journal of Biological Chemistry, 286(52), 44878-44887.

Drop, B.A., Webber-Birungi, M., Fusetti, F., Kouril, R., Redding, K., Boekema, E.J. & Croce, R. (2011). Photosystem I of Chlamydomonas reinhardtii is composed of nine Light-harvesting complexes (Lhca) located on one side of the core. Journal of Biological Chemistry, 286, 44878-44887.

Gall, A., Berera, R., Alexandre, M.T.A., Pascal, A.A., Bordes, L., Mendes-Pinto, M.M., Andrianambinintsoa, S., Stoitchkova, K.V., Marin, A., Valkunas, L., Horton, P., Kennis, J.T.M., Grondelle, R. van, Ruban, A. & Robert, B. (2011). Molecular Adaptation of Photoprotection: Triplet States in Light-Harvesting Proteins. Biophysical Journal, 101(4), 934-942.

Gall, A., Berera, R., Alexandre, M.T.A., Pascal, A.A., Bordes, L., Mendes-Pinto, M.M., Andrianambinintsoa, S., Stoitchkova, K.V., Marin, A., Valkunas, L., Horton, P., Kennis, J.T.M., Grondelle, R. van, Ruban, A. & Robert, B. (2011). Molecular Adaptation of Photoprotection: Triplet States in Light-Harvesting Proteins. Biophysical Journal, 101(4), 934-942.

Grondelle, R. van (2011). Excitation energy transfer and non-photochemical quenching in photosynthesis. European Biophysics Journal, 40(1), 180.

Ilioaia, C., Kruger, T.P.J., Johnson, M.P., Horton, P., Ruban, A.V. & Grondelle, R. van (2011). Fluorescence dynamics of plant light harvesting complexes studied by single molecule spectroscopy. European Biophysics Journal, 40(1), 176-177.

Ilioaia, C., Johnson, M.P., Duffy, C.D.P., Pascal, A.A., Grondelle, R. van, Robert, B. & Ruban, A.V. (2011). Origin of Absorption Changes Associated with Photoprotective Energy Dissipation in the Absence of Zeaxanthin. Journal of Biological Chemistry, 286(1), 91-98.

Ilioaia, C., Johnson, M.P., Liao, P.N., Pascal, A.A., Grondelle, R. van, Walla, P.J., Ruban, A.V. & Robert, B. (2011). Photoprotection in Plants Involves a Change in Lutein 1 Binding Domain in the Major Light-harvesting Complex of Photosystem II. Journal of Biological Chemistry, 286(31), 27247-27254.

Kloz, M., Pillai, S., Kodis, G., Gust, D., Moore, T.A., Moore, A.L., Grondelle, R. van & Kennis, J.T.M. (2011). Carotenoid Photoprotection in Artificial Photosynthetic Antennas. The Journal of the American Chemical Society, 133(18), 7007-7015.

Kloz, M., Grondelle, R. van & Kennis, J.T.M. (2011). Wave-length-modulated femtosecond stimulated raman spectroscopy-approach towards automatic data processing. Physical Chemistry Chemical Physics - PCCP, 13(40), 18123-18133.

Kruger, T.P.J., Wientjes, E., Croce, R. & Grondelle, R. van (2011). Conformational switching of a light-harvesting protein suggests multifunctionality. Proceedings of the National Academy of Sciences of the United States of America, 13516-13521.

Kruger, T.P.J., Ilioaia, C., Johnson, M.P., Ruban, A.V., Horton, P., Papagiannakis, E. & Grondelle, R. van (2011). Controlled disorder in plant light harvesting complex II explains its photoprotective role. Nature.

Kruger, T.P.J., Ilioaia, C. & Grondelle, R. van (2011). Fluorescence Intermittency from the Main Plant Light-Harvesting Complex: Resolving Shifts between Intensity Levels. Journal of Physical Chemistry B, 155(18), 5071-5082.

Kruger, T.P.J., Ilioaia, C., Valkunas, L. & Grondelle, R. van (2011). Fluorescence intermittency from the main plant light-harvesting complex: sensitivity to the local environment. Journal of Physical Chemistry B, 115(18), 5083-5095.

Laptenok, S., Visser, N.V., Engel, R., Westphal, A.H., Hoek, A. van, Mierlo, C.P.M., Stokkum, I.H.M. van, Amerongen, H. van & Visser, A.J.W.G. (2011). A general approach to detect folding intermediates from steady-state and time-resolved fluorescence of single tryptophan-containing proteins. Biochemistry, 50(17), 3441-3450.

Lian, L.J., Stokkum, I.H.M. van, Koehorst, R.B.M., Jongerius, I., Kirilovsky, D. & Amerongen, H. van (2011). Site, rate, and mechanism of photoprotective quenching in cyanobacteria. ACS Nano, 133(45), 18304-18311.

Magis, G.J, Olsen, J.D., Reynolds, N.P., Leggett, G.J., Hunter, C.N., Aartsma, T.J. & Frese, R.N. (2011). Use of Engineered Unique Cysteine Residues to Facilitate Oriented Coupling of Proteins Directly to a Gold Substrate. Photochemistry and Photobiology, 87, 1050-1057.

Marin, A., Doust, A.B., Scholes, G.D., Wilk, K.E., Curmi, P.M.G., Stokkum, I.H.M. van & Grondelle, R. van (2011). Flow of excitation energy in the cryptophyte light-harvesting antenna phycocyanin 645. Biophysical Journal, 101(4), 1004-1113.

Marin, A., Passarini, F., Stokkum, I.H.M. van, Grondelle, R. van & Croce, R. (2011). Minor Complexes at Work: Light-Harvesting by Carotenoids in the Photosystem II Antenna Complexes CP24 and CP26. Biophysical Journal, 100(11), 2829-2838.

Mathes, T., Stokkum, I.H.M. van, Bonetti, C., Hegemann, P. & Kennis, J.T.M. (2011). The Hydrogen-Bond Switch Reaction of the Blrb Bluf Domain of Rhodobacter sphaeroides. Journal of Physical Chemistry B, 115(24), 7963-7971.

Novoderezhkin, V.I., Cohen Stuart, T.A. & Grondelle, R. van (2011). Dynamics of Exciton Relaxation in LH2 Antenna Probed by Multipulse Nonlinear Spectroscopy. Journal of Physical Chemistry A, 115(16), 3834-3844.

Novoderezhkin, V.I., Marin, A. & Grondelle, R. van (2011). Intra- and inter-monomeric transfers in the light harvesting LHCII complex: the Redfield-Forster picture. Physical Chemistry Chemical Physics - PCCP, 13(38), 17093-17103.

Novoderezhkin, V.I., Romero Mesa, E., Dekker, J.P. & Grondelle, R. van (2011). Multiple charge separation pathways in photosystem II: modeling of transient absorption kinetics. Chemical Physics, 12, 681-688.

Oort, B.F. van, Marechal, A, Ruban, A.V., Robert, B., Pascal, A.A., Ruijter, N.C.A. de, Grondelle, R. van & Amerongen, H. van (2011). Different crystal morphologies lead to slightly different conformations   of light-harvesting complex II as monitored by variations of the intrinsic fluorescence lifetime. Physical Chemistry Chemical Physics - PCCP, 13(27), 12614-12622.

Pandit, A., Shirzad-Wasei, N, Wlodarczyk, L.M., Van Roon, H., Boekema, E.J., Dekker, J.P. & Grip, W.J. de (2011). Assembly of the major light-harvesting complex II in lipid nanodiscs. Biophysical Journal, 101, 2507-2515.

Romero, E., Stokkum, I.H.M. van, Dekker, J.P. & Grondelle, R. van (2011). Ultrafast carotenoid band shifts correlated with Chl(z) excited states in the photosystem II reaction center: are the carotenoids involved in energy transfer? Physical Chemistry Chemical Physics - PCCP, 13(13), 5573-5575.

Rupenyan, A.B., Vreede, J., Stokkum, I.H.M. van, Hospes, M., Kennis, J.T.M., Hellingwerf, K.J. & Groot, M.L. (2011). Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein. Journal of Physical Chemistry B, 115(20), 6668-6677.

Scholes, G.D., Fleming, G.R., Olaya-Castro, A. & Grondelle, R. van (2011). Lessons from nature about solar light harvesting. Nature Chemistry, 3(10), 763-774.

Stahl, A.D., Hospes, M., Singhal, K., Stokkum, I.H.M. van, Grondelle, R. van, Groot, M.L. & Hellingwerf, K.J. (2011). On the involvement of Single-Bond Rotation in the Primary Photochemistry of Photoactive Yellow Protein. Biophysical Journal, 101(5), 1184-1192.

Stokkum, I.H.M. van, Gauden, M., Crosson, S., Grondelle, R. van, Moffat, K. & Kennis, J.T.M. (2011). The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy. Photochemistry and Photobiology, 87(3), 534-541.

Sytina, O., Alexandre, M.T., Heyes, D.J., Hunter, C.N., Robert, B., Grondelle, R. van & Groot, M.L. (2011). Enzyme activation and catalysis: characterisation of the vibrational modes of substrate and product in protochlorophyllide oxidoreductase. Physical Chemistry Chemical Physics - PCCP, 13(6), 2307.

Sytina, O., Novoderezhkin, V.I., Grondelle, R. van & Groot, M.L. (2011). Modeling of Multi-Exciton Transient Absorption Spectra of Protochlorophyllide Aggregates in Aqueous Solution. Journal of Physical Chemistry A, 115(43), 11944-11951.

Sytina, O., Stokkum, I.H.M. van, Grondelle, R. van & Groot, M.L. (2011). Single and multi-exciton dynamics in aqueous protochlorophyllide aggregates. Journal of Physical Chemistry A, 115(16), 3936-3946.

Sznee, K., Dekker, J.P., Dame, R.T., Van Roon, H., Wuite, G.J.L. & Frese, R.N. (2011). JUMPING MODE ATOMIC FORCE MICROSCOPY ON GRANA MEMBRANES FROM SPINACH. Journal of Biological Chemistry.

Toh, K.C., Stojkovic, E.A, Stokkum, I.H.M. van, Moffat, K. & Kennis, J.T.M. (2011). Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs. Physical Chemistry Chemical Physics - PCCP, 13(25), 11985-11997.

Toh, K.C., Stojkovic, E.A, Rupenyan, A.B., Stokkum, I.H.M. van, Salumbides, M., Groot, M.L., Moffat, K. & Kennis, J.T.M. (2011). Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy. Journal of Physical Chemistry A, 115(16), 3778-3786.

Valkunas, L., Chmeliov, J., Trinkunas, G., Duffy, C.D.P., Grondelle, R. van & Ruban, A.V. (2011). Excitation Migration, Quenching, and Regulation of Photosynthetic Light   Harvesting in Photosystem II. Journal of Physical Chemistry B, 115(29), 9252-9260.

Vrijling, A C L, Braaf, B., Snellenburg, J.J., Lange, F. de, Zaal, M.J.W., Heijde, G.L. van der & Sicam, V.A.D.P. (2011). Clinical Validation of Point-Source Corneal Topography in Keratoplasty. Optometry and Vision Science, 88(7), 837-842.

Weij - de Wit, C.D. van der, Dekker, J.P., Grondelle, R. van & Stokkum, I.H.M. van (2011). Charge Separation is Virtually Irreversible in Photosystem II Core Complexes with Oxidized Primary Quinone Acceptor. Journal of Physical Chemistry A, 115(16), 3947-3956.

Wientjes, E., Stokkum, I.H.M. van, Amerongen, H. van & Croce, R. (2011). Excitation-energy transfer dynamics of higher plant photosystem I light-harvesting complexes. Biophysical Journal, 100(5), 1372-1380.

Wientjes, I.E. & Croce, R. (2011). The light-harvesting complexes of higher-plant Photosystem I: Lhca1/4 and Lhca2/3 form two red-emitting heterodimers. Biochemical Journal, 477-485.

Wientjes, E. & Croce, R. (2011). The light-harvesting complexes of higher-plant Photosystem I: Lhca1/4 and Lhca2/3 form two red-emitting heterodimers. Biochemical Journal, 433, 477-485.

Wientjes, E., Stokkum, I.H.M. van, Amerongen, H. van & Croce, R. (2011). The role of the individual lhcas in photosystem i excitation energy trapping. Biophysical Journal, 101(3), 745-754.

Wientjes, E., Stokkum, I.H.M. van, Amerongen, H. van & Croce, R. (2011). The role of the individual Lhca’s in Photosystem I excitation energy trapping. Biophysical Journal, 101, 745-754.

Witte, S.M., Negrean, A., Lodder, J.C., Kock, C.P.J. de, Testa-Silva, G., Mansvelder, H.D. & Groot, M.L. (2011). Label-free live brain imaging and targeted patching with third-harmonic generation microscopy. Proceedings of the National Academy of Sciences of the United States of America, 108(15), 5970-5975.

Woronowicz, K., Sha, D., Frese, R.N. & Niederman, R.A. (2011). The Accumulation of the Light-Harvesting 2 Complex During Remodeling of the Rhodobacter sphaeroides Intracytoplasmic Membrane Results in a Slowing of the Electron Transfer Turnover Rate of Photochemical Reaction Centers. Biochemistry, 50(22), 4819-4829.

Woronowicz, K., Sha, D., Frese, R.N., Sturgis, J.N., Nanda, V. & Niederman, R.A. (2011). The effects of protein crowding in bacterial photosynthetic membranes on the flow of quinone redox species between the photochemical reaction center and the ubiquinolcytochrome c2 oxidoreductase. Metallomics, 3, 765-774.

Den Hollander, M., Magis, G.J, Fuchsenberger, P, Aartsma, T.J., Jones, M.R. & Frese, R.N. (2011). Enhanced Photocurrent Generation by Photosynthetic Bacterial Reaction Centers through Molecular Relays, Light-Harvesting Complexes, and Direct Protein_Gold Interactions. Langmuir, 27, 10282-10294.