Publications 2010

Alexandre, M.T.A., Purcell, E.B., Grondelle, R. van, Robert, B., Kennis, J.T.M., & Crosson, S., Electronic and Protein Structural Dynamics of a Photosensory Histidine Kinase. Biochemistry. 49(23). 

Berera, R., Stokkum, I.H.M. van, Kennis, J.T.M., Grondelle, R. van & Dekker, J.P., The light-harvesting function of carotenoids in the cyanobacterial stress-inducible IsiA complex. Chemical Physics. 373(1-2): p. 65-70.

Berghuis, B., Spruijt, R., Koehorst, R.B.M., van Hoek, A., Laptenok, S.P., van Oort, B., and van Amerongen, H. Exploring the structure of the N-terminal domain of CP29 with ultrafast fluorescence spectroscopy. European Biophysics Journal with Biophysics Letters 39, 631-638.

Bonetti, C., Alexandre, M.T.A., Stokkum, I.H.M. van, Hiller, R., Grondelle, R. van, Groot, M.L. & Kennis, J.T.M., Identification of excited-state energy transfer and relaxation pathways in the peridinin-chlorophyll complex: an ultrafast mid-infrared study. Phys Chem Chem Phys. 12(32): p. 9256-66.

Carroll, E.C., Song, S.H., Kumauchi, M., Stokkum, I.H.M. van, Jailaubekov, A., Hoff, W.D. & Larsen, D.S. Subpicosecond Excited-State Proton Transfer Preceding Isomerization During the Photorecovery of Photoactive Yellow Protein. Journal of Physical Chemistry Letters. 1(19): p. 2793-2799.

Frolov, D., Marsh M., Crouch L.I., Fyfe P.K., Robert B., Grondelle, R. van, Hadfield A. & Jones, M.R., Structural and Spectroscopic Consequences of Hexacoordination of a Bacteriochlorophyll Cofactor in the Rhodobacter sphaeroides Reaction Center. Biochemistry. 49(9): p. 1882-1892.

Giera, W., Ramesh, V.M., Webber, A.N., Stokkum, I.H.M. van, Grondelle, R. van & Gibasiewicz, K., Effect of the P700 pre-oxidation and point mutations near A(0) on the reversibility of the primary charge separation in Photosystem I from Chlamydomonas reinhardtii. Biochimica et Biophysica Acta. 1797(1): p. 106-112.

Grondelle, R. van and V.I. Novoderezhkin, PHOTOSYNTHESIS Quantum design for a light trap. Nature. 463(7281): p. 614-615.

Klerk, J.S. de, Stokkum, I.H.M. van, Szemik-Hojniak, A., Deperasinska, I., Gooijer, C., Zhang, H., Buma, W.J. & Ariese, F., Excited State Processes of 2-Butylamino-6-methyl-4-nitropyridine N-oxide in Nonpolar Solvents. A Transient Absorption Spectroscopy Study. Journal of Physical Chemistry A. 114(12): p. 4045-4050.

Koehorst, R.B.M., Laptenok, S., Oort, B. van, Hoek, A. van, Spruijt, R.B., Stokkum, I.H.M. van, Amerongen, H. van, E Hemminga, M.A., Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths. European Biophysics Journal. 39(4, Sp. Iss. SI): p. 647-656.

Kruger, T.P.J., Novoderezhkin, V.I., Ilioaia, C. & Grondelle, R. van, Fluorescence Spectral Dynamics of Single LHCII Trimers. Biophysical Journal. 98(12): p. 3093-3101.

Laptenok, S.P., Borst, J.W., Mullen, K.M., Stokkum, I.H.M. van, Visser, A.J.W.G. & Amerongen, H. van, Global analysis of Forster resonance energy transfer in live cells measured by fluorescence lifetime imaging microscopy exploiting the rise time of acceptor fluorescence. Physical Chemistry Chemical Physics. 12(27): p. 7593-7602.

Marin, A., Passarini, F., Croce R., Grondelle, R. van, Energy Transfer Pathways in the CP24 and CP26 Antenna Complexes of Higher Plant Photosystem II: A comparative Study. Biophysical Journal. Volume: 99. Issue: 12. Published: Dec 15 2010.

Milder, M.T.W., Brugemann, B., Grondelle, R. van, Herek, J.L., Revisiting the optical properties of the FMO protein. Photosynthesis Research. 104(2-3): p. 257-274.

Mullen, K.M. & Stokkum, I.H.M. van. Exponential Modelsfor time-resolved spectroscopy data. In V Pereyra & G Scherer (Eds.), Exponential Data Fitting and its Applications (pp. 110-127). Bentham.

Novoderezhkin, V.I., et al., Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory. Biophysical Journal. 99(2): p. 344-352.

Novoderezhkin, V.I. and R. van Grondelle, Physical origins and models of energy transfer in photosynthetic light-harvesting. Phys Chem Chem Phys. 12(27): p. 7352-65.

Oort, B, Alberts, M., de Bianchi, S., Dall'Osto, L., Bassi, R., Trinkunas, G., Croce, R., and van Amerongen, H. Effect of AntennDepletion in Photosystem II on Excitation Energy Transfer in Arabidopsis thaliana. Biophysical Journal 98, 922-931.

Pawlowicz, N.P., N.P., Stokkum, I.H.M. van, Breton, J., Grondelle, R. van & Jones, M.R., An investigation of slow charge separation in a tyrosine M210 to tryptophan mutant of the Rhodobacter sphaeroides reaction center by femtosecond mid-infrared spectroscopy. Phys Chem Chem Phys. 12(11): p. 2693-705.

Romero, E., Stokkum, I.H.M. van, Novoderezhkin, V.I., Dekker, J.P. & Grondelle, R. van, Two Different Charge Separation Pathways in Photosystem II. Biochemistry. 49(20): p. 4300-4307.

Sytina, O.A., Sokkum, I.H.M. van, Heyes, D.J., Hunter, C.N., Grondelle, R. van & Groot, M.L., Protochlorophyllide Excited-State Dynamics in Organic Solvents Studied by Time-Resolved Visible and Mid-Infrared Spectroscopy. Journal of Physical Chemistry B. 114(12): p. 4335-4344.

Toh, K.C., Stojkovic, E.A., Stokkum, I.H.M. van, Moffat, K. & Kennis, J.T.M., Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome. Proceedings of the National Academy of Sciences of the United States of America. 107(20): p. 9170-9175.

Witte, S.M., Negrean, A., Lodder, J.C., Silva, G. Kock, C.P.J. de, Mansvelder, H.D. & Groot, M.L. Label-free Live Brain Imaging with Ultrafast Nonlinear Microscopy. In M. Chergui (Ed.), Ultrafast Phenomena XVII: Proceedings of the 17th International Conference (pp. 871-873). New York: Oxford University Press.

Zoon, P.D., Stokkum, I.H.M. van, Parent, M., Mongin, O., Blanchard-Desce, M. & Brouwer, A.M., Fast photo-processes in triazole-based push-pull systems. Physical Chemistry Chemical Physics. 12(11): p. 2706-2715.