Publications

[1-66]

Publications

1. 'Short Hydrogen Bonds and Negative Charge in Photoactive Yellow Protein Promote Fast Isomerization but not High Quantum Yield.' J. Zhu, J. Vreede, M. Hospes, J. Arents, J.T.M. Kennis, I.H.M. van Stokkum, K.J. Hellingwerf, and M.L. Groot, Journal of Physical Chemistry B, 2015. 119(6): p. 2372-2383.

2. 'Ultrafast infrared spectroscopy in photosynthesis.' M. Di Donato and M.L. Groot, Biochimica Et Biophysica Acta-Bioenergetics, 2015. 1847(1): p. 2-11.

3. 'Early Bacteriopheophytin Reduction in Charge Separation in Reaction Centers of Rhodobacter sphaeroides.' J. Zhu, I.H.M. van Stokkum, L. Paparelli, M.R. Jones, and M.L. Groot, Biophysical Journal, 2013. 104(11): p. 2493-2502.

4. 'Photoionization and Electron Radical Recombination Dynamics in Photoactive Yellow Protein Investigated by Ultrafast Spectroscopy in the Visible and Near-Infrared Spectral Region.' J. Zhu, L. Paparelli, M. Hospes, J. Arents, J.T.M. Kennis, I.H.M. van Stokkum, K.J. Hellingwerf, and M.L. Groot, Journal of Physical Chemistry B, 2013. 117(38): p. 11042-11048.

5. 'Excitation Energy Trapping and Dissipation by Ni-Substituted Bacteriochlorophyll a in Reconstituted LH1 Complexes from Rhodospirillum rubrum.' P.H. Lambrev, Y. Miloslavina, I.H.M. van Stokkum, A.D. Stahl, M. Michalik, A. Susz, J. Tworzydlo, J. Fiedor, G. Huhn, M.-L. Groot, R. van Grondelle, G. Garab, and L. Fiedor, Journal of Physical Chemistry B, 2013. 117(38): p. 11260-11271.

6. 'Ultrafast mid-infrared spectroscopy by chirped pulse upconversion in 1800-1000cm(-1) region.' J. Zhu, T. Mathes, A.D. Stahl, J.T.M. Kennis, and M.L. Groot, Optics Express, 2012. 20(10): p. 10562-10571.

7. 'Short-coherence off-axis holographic phase microscopy of live cell dynamics.' S. Witte, A. Plauska, M.C. Ridder, L. van Berge, H.D. Mansvelder, and M.L. Groot, Biomedical Optics Express, 2012. 3(9): p. 2184-2189.

8. 'Excited state proton transfer in strongly enhanced GFP (sGFP2).' B. van Oort, M.J.T. ter Veer, M.L. Groot, and I.H.M. van Stokkum, Physical Chemistry Chemical Physics, 2012. 14(25): p. 8852-8858.

9. 'Spectroscopic characterization of the first ultrafast catalytic intermediate in protochlorophyllide oxidoreductase.' O.A. Sytina, I.H.M. van Stokkum, D.J. Heyes, C.N. Hunter, and M.L. Groot, Physical Chemistry Chemical Physics, 2012. 14(2): p. 616-625.

10. 'Role of PufX in Photochemical Charge Separation in the RC-LH1 Complex from Rhodobacter sphaeroides: An Ultrafast Mid-IR Pump-Probe Investigation.' A.D. Stahl, L.I. Crouch, M.R. Jones, I. van Stokkum, R. van Grondelle, and M.L. Groot, Journal of Physical Chemistry B, 2012. 116(1): p. 434-444.

11. 'Excited state dynamics and catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.' N.S. Scrutton, M.L. Groot, and D.J. Heyes, Physical Chemistry Chemical Physics, 2012. 14(25): p. 8818-8824.

12. 'Hydrogen Bond Switching among Flavin and Amino Acids Determines the Nature of Proton-Coupled Electron Transfer in BLUF Photoreceptors.' T. Mathes, J. Zhu, I.H.M. van Stokkum, M.L. Groot, P. Hegemann, and J.T.M. Kennis, Journal of Physical Chemistry Letters, 2012. 3(2): p. 203-208.

13. 'Label-free live brain imaging and targeted patching with third-harmonic generation microscopy.' S. Witte, A. Negrean, J.C. Lodder, C.P.J. de Kock, G.T. Silva, H.D. Mansvelder, and M.L. Groot, Proceedings of the National Academy of Sciences of the United States of America, 2011. 108(15): p. 5970-5975.

14. 'Primary Reactions of Bacteriophytochrome Observed with Ultrafast Mid-Infrared Spectroscopy.' K.C. Toh, E.A. Stojkovic, A.B. Rupenyan, I.H.M. van Stokkum, M. Salumbides, M.-L. Groot, K. Moffat, and J.T.M. Kennis, Journal of Physical Chemistry A, 2011. 115(16): p. 3778-3786.

15. 'Single and Multi-Exciton Dynamics in Aqueous Protochlorophyllide Aggregates.' O.A. Sytina, I.H.M. van Stokkum, R. van Grondelle, and M.L. Groot, Journal of Physical Chemistry A, 2011. 115(16): p. 3936-3946.

16. 'Modeling of Multi-Exciton Transient Absorption Spectra of Protochlorophyllide Aggregates in Aqueous Solution.' O.A. Sytina, V.I. Novoderezhkin, R. van Grondelle, and M.L. Groot, Journal of Physical Chemistry A, 2011. 115(43): p. 11944-11951.

17. 'Enzyme activation and catalysis: characterisation of the vibrational modes of substrate and product in protochlorophyllide oxidoreductase.' O.A. Sytina, M.T. Alexandre, D.J. Heyes, C.N. Hunter, B. Robert, R. van Grondelle, and M.L. Groot, Physical Chemistry Chemical Physics, 2011. 13(6): p. 2307-2313.

18. 'On the Involvement of Single-Bond Rotation in the Primary Photochemistry of Photoactive Yellow Protein.' A.D. Stahl, M. Hospes, K. Singhal, I. van Stokkum, R. van Grondelle, M.L. Groot, and K.J. Hellingwerf, Biophysical Journal, 2011. 101(5): p. 1184-1192.

19. 'Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein.' A.B. Rupenyan, J. Vreede, I.H.M. van Stokkum, M. Hospes, J.T.M. Kennis, K.J. Hellingwerf, and M.L. Groot, Journal of Physical Chemistry B, 2011. 115(20): p. 6668-6677.

20. 'Proton transfer events in GFP.' M. Di Donato, L.J.G.W. van Wilderen, I.H.M. Van Stokkum, T.C. Stuart, J.T.M. Kennis, K.J. Hellingwerf, R. van Grondelle, and M.L. Groot, Physical Chemistry Chemical Physics, 2011. 13(36): p. 16295-16305.

21. 'Cofactors Involved in Light-Driven Charge Separation in Photosystem I Identified by Subpicosecond Infrared Spectroscopy.' M. Di Donato, A.D. Stahl, I.H.M. van Stokkum, R. van Grondelle, and M.-L. Groot, Biochemistry, 2011. 50(4): p. 480-490.

22. 'Protochlorophyllide Excited-State Dynamics in Organic Solvents Studied by Time-Resolved Visible and Mid-Infrared Spectroscopy.' O.A. Sytina, I.H.M. van Stokkum, D.J. Heyes, C.N. Hunter, R. van Grondelle, and M.L. Groot, Journal of Physical Chemistry B, 2010. 114(12): p. 4335-4344.

23. 'Identification of excited-state energy transfer and relaxation pathways in the peridinin-chlorophyll complex: an ultrafast mid-infrared study.' C. Bonetti, M.T.A. Alexandre, I.H.M. van Stokkum, R.G. Hiller, M.L. Groot, R. van Grondelle, and J.T.M. Kennis, Physical Chemistry Chemical Physics, 2010. 12(32): p. 9256-9266.

24. 'Single-shot two-dimensional full-range optical coherence tomography achieved by dispersion control.' S. Witte, M. Baclayon, E.J.G. Peterman, R.F.G. Toonen, H.D. Mansvelder, and M.L. Groot, Optics Express, 2009. 17(14): p. 11335-11349.

25. 'Dynamics of Carbon Monoxide Photodissociation in Bradyrhizobium japonicum FixL Probed by Picosecond Midinfrared Spectroscopy.' L.J.G.W. van Wilderen, J.M. Key, I.H.M. van Stokkum, R. van Grondelle, and M.L. Groot, Journal of Physical Chemistry B, 2009. 113(11): p. 3292-3297.

26. 'Ultrafast catalytic processes and conformational changes in the light-driven enzyme protochlorophyllide oxidoreductase (POR).' O.A. Sytina, D.J. Heyes, C.N. Hunter, and M.L. Groot, Biochemical Society Transactions, 2009. 37: p. 387-391.

27. 'A Femtosecond Visible/Visible and Visible/Mid-Infrared Transient Absorption Study of the Light Harvesting Complex II.' A.D. Stahl, M. Di Donato, I. van Stokkum, R. van Grondelle, and M.L. Groot, Biophysical Journal, 2009. 97(12): p. 3215-3223.

28. 'Reaction Pathways of Photoexcited Retinal in Proteorhodopsin Studied by Pump-Dump-Probe Spectroscopy.' A. Rupenyan, I.H.M. van Stokkum, J.C. Arents, R. van Grondelle, K.J. Hellingwerf, and M.L. Groot, Journal of Physical Chemistry B, 2009. 113(50): p. 16251-16256.

29. 'CO Photodissociation Dynamics in Cytochrome P450BM3 Studied by Subpicosecond Visible and Mid-Infrared Spectroscopy.' A. Rupenyan, J. Commandeur, and M.L. Groot, Biochemistry, 2009. 48(26): p. 6104-6110.

30. 'Primary Reactions of the LOV2 Domain of Phototropin Studied with Ultrafast Mid-infrared Spectroscopy and Quantum Chemistry.' M.T.A. Alexandre, T. Domratcheva, C. Bonetti, L.J.G.W. van Wilderen, R. van Grondelle, M.-L. Groot, K.J. Hellingwerf, and J.T.M. Kennis, Biophysical Journal, 2009. 97(1): p. 227-237.

31. 'Conformational changes in an ultrafast light-driven enzyme determine catalytic activity.' O.A. Sytina, D.J. Heyes, C.N. Hunter, M.T. Alexandre, I.H.M. van Stokkum, R. van Grondelle, and M.L. Groot, Nature, 2008. 456(7224): p. 1001-U89.

32. 'Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy.' A. Rupenyan, I.H.M. van Stokkum, J.C. Arents, R. van Grondelle, K. Hellingwerf, and M.L. Groot, Biophysical Journal, 2008. 94(10): p. 4020-4030.

33. 'Identification of the first steps in charge separation in bacterial photosynthetic reaction centers of Rhodobacter sphaeroides by ultrafast mid-infrared spectroscopy: Electron transfer and protein dynamics.' N.P. Pawlowicz, R. Van Grondelle, I.H.M. van Stokkum, J. Breton, M.R. Jones, and M.L. Groot, Biophysical Journal, 2008. 95(3): p. 1268-1284.

34. 'Identification of the first steps in charge separation in bacterial photosynthetic reaction centers of Rhodobacter sphaeroides (vol 95, pg 1268, 2008).' N.P. Pawlowicz, R. van Grondelle, I.H.M. van Stokkum, J. Breton, M.R. Jones, and M.L. Groot, Biophysical Journal, 2008. 95(8): p. 4089-4089.

35. 'Primary charge separation in the photosystem II core from Synechocystis: A comparison of femtosecond visible/midinfrared pump-probe spectra of wild-type and two P-680 mutants.' M. Di Donato, R.O. Cohen, B.A. Diner, J. Breton, R. van Grondelle, and M.L. Groot, Biophysical Journal, 2008. 94(12): p. 4783-4795.

36. 'Hydrogen Bond Switching among Flavin and Amino Acid Side Chains in the BLUF Photoreceptor Observed by Ultrafast Infrared Spectroscopy.' C. Bonetti, T. Mathes, I.H.M. van Stokkum, K.M. Mullen, M.-L. Groot, R. van Grondelle, P. Hegemann, and J.T.M. Kennis, Biophysical Journal, 2008. 95(10): p. 4790-4802.

37. 'Charge separation and energy transfer in the photosystem II core complex studied by femtosecond midinfrared spectroscopy.' N.P. Pawlowicz, M.L. Groot, I.H.M. van Stokkum, J. Breton, and R. van Grondelle, Biophysical Journal, 2007. 93(8): p. 2732-2742.

38. 'Charge separation and energy transfer in the Photosystem II core complex studied by femtosecond Vis pump/MidIR probe spectroscopy.' N.P. Pawlowicz, M.L. Groot, L.H.M. Stokkum, J. Breton, and R. van Grondelle, Biophysical Journal, 2007: p. 506A-506A.

39. 'Ultrafast spectroscopy of biological photoreceptors.' J.T.M. Kennis and M.-L. Groot, Current Opinion in Structural Biology, 2007. 17(5): p. 623-630.

40. 'Time-resolved methods in biophysics. 5. Femtosecond time-resolved and dispersed infrared spectroscopy on proteins.' M.L. Groot, L.J.G.W. van Wilderen, and M. Di Donato, Photochemical & Photobiological Sciences, 2007. 6(5): p. 501-507.

41. 'Excitation energy transfer in the Photosystem II core antenna complex CP43 studied by femtosecond visible/visible and visible/mid-infrared pump probe spectroscopy.' M. Di Donato, R. van Grondelle, I.H.M. van Stokkum, and M.L. Groot, Journal of Physical Chemistry B, 2007. 111(25): p. 7345-7352.

42. 'The light activation mechanism of a novel blue-light photoreceptor.' C. Bonetti, T. Mathes, I.H.M. van Stokkum, R. van Grondelle, M.-L. Groot, P. Hegemann, and J.T.M. Kennis, Biophysical Journal, 2007: p. 337A-337A.

43. 'Triplet state dynamics in peridinin-chlorophyll-a-protein: A new pathway of photoprotection in LHCs?', M.T.A. Alexandre, D.C. Luehrs, I.H.M. van Stokkum, R. Hiller, M.-L. Groot, J.T.M. Kennis, and R. Van Grondelle, Biophysical Journal, 2007. 93(6): p. 2118-2128.

44. 'Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein.' L.J.G.W. van Wilderen, M.A. van der Horst, I.H.M. van Stokkum, K.J. Hellingwerf, R. van Grondelle, and M.L. Groot, Proceedings of the National Academy of Sciences of the United States of America, 2006. 103(41): p. 15050-15055.

45. 'Initial charge separation in photosystem II reaction centers identified with femtosecond mid-infrared spectroscopy.' M.L. Groot, N.P. Pawlowicz, L.J. van Wilderen, J. Breton, I.H. van Stokkum, and R. van Grondelle, Febs Journal, 2005. 272: p. 449-450.

46. 'Initial electron donor and acceptor in isolated Photosystem II reaction centers identified with femtosecond mid-IR spectroscopy.' M.L. Groot, N.P. Pawlowicz, L. van Wilderen, J. Breton, I.H.M. van Stokkum, and R. van Grondelle, Proceedings of the National Academy of Sciences of the United States of America, 2005. 102(37): p. 13087-13092.

47. 'Early steps in blue light reception by plants: an ultrafast mid-infrared spectroscopic study of the LOV2 domain of phototropin.' M.T.A. Alexandre, L.J.G. van Wilderen, R. van Grondelle, K.J. Hellingwerf, M.L. Groot, and J.T.M. Kennis, Biophysical Journal, 2005. 88(1): p. 509A-509A.

48. 'Global and target analysis of fluorescence measurements on photosystem 2 reaction centers upon red excitation.' F. van Mourik, M.L. Groot, R. van Grondelle, J.P. Dekker, and I.H.M. van Stokkum, Physical Chemistry Chemical Physics, 2004. 6(20): p. 4820-4824.

49. 'Femtosecond visible/visible and visible/mid-IR pump-probe study of the photosystem II core antenna complex CP47.' M.L. Groot, J. Breton, L. van Wilderen, J.P. Dekker, and R. van Grondelle, Journal of Physical Chemistry B, 2004. 108(23): p. 8001-8006.

50. 'Electronic states in 2-aminopurine revealed by ultrafast transient absorption and target analysis.' O.F.A. Larsen, I.H.M. van Stokkum, M.L. Groot, J.T.M. Kennis, R. van Grondelle, and H. van Amerongen, Chemical Physics Letters, 2003. 371(1-2): p. 157-163.

51. 'Ultrafast enzymatic reaction dynamics in protochlorophyllide oxidoreductase.' D.J. Heyes, C.N. Hunter, I.H.M. van Stokkum, R. van Grondelle, and M.L. Groot, Nature Structural Biology, 2003. 10(6): p. 491-492.

52. 'Ultrafast enzymatic reaction dynamics in protochlorophyllide oxidoreductase (vol 10, pg 491, 2003).' D.J. Heyes, C.N. Hunter, I.H.M. van Stokkum, R. van Grondelle, and M.L. Groot, Nature Structural Biology, 2003. 10(6).

53. 'Initial steps of signal generation in photoactive yellow protein revealed with femtosecond mid-infrared spectroscopy.' M.L. Groot, L. van Wilderen, D.S. Larsen, M.A. van der Horst, I.H.M. van Stokkum, K.J. Hellingwerf, and R. van Grondelle, Biochemistry, 2003. 42(34): p. 10054-10059.

54. 'Initial steps in biological signal generation: Ultrafast isomerization and structural changes in the photoactive yellow protein.' M.L. Groot, D.S. Larsen, K.J. Hellingwerf, and R. Van Grondelle, Abstracts of Papers of the American Chemical Society, 2003. 226: p. U339-U340.

55. 'Coherent infrared emission from myoglobin crystals: An electric field measurement.' M.L. Groot, M.H. Vos, I. Schlichting, F. van Mourik, M. Joffre, J.C. Lambry, and J.L. Martin, Proceedings of the National Academy of Sciences of the United States of America, 2002. 99(3): p. 1323-1328.

56. 'Spectroscopic properties of the CP43 core antenna protein of photosystem II.' M.L. Groot, R.N. Frese, F.L. de Weerd, K. Bromek, A. Pettersson, E.J.G. Peterman, I.H.M. van Stokkum, R. van Grondelle, and J.P. Dekker, Biophysical Journal, 1999. 77(6): p. 3328-3340.

57. 'Three-pulse photon echo measurements on the accessory pigments in the reaction center of Rhodobacter sphaeroides.' M.L. Groot, J.Y. Yu, R. Agarwal, J.R. Norris, and G.R. Fleming, Journal of Physical Chemistry B, 1998. 102(30): p. 5923-5931.

58. 'Charge separation in the reaction center of photosystem II studied as a function of temperature.' M.L. Groot, F. vanMourik, C. Eijckelhoff, I.H.M. vanStokkum, J.P. Dekker, and R. vanGrondelle, Proceedings of the National Academy of Sciences of the United States of America, 1997. 94(9): p. 4389-4394.

59. 'Radical pair quantum yield in reaction centers of photosystem II of green plants and of the bacterium Rhodobacter sphaeroides. Saturation behavior with sub-picosecond pulses.' M.L. Groot, R. vanGrondelle, J.A. Leegwater, and F. vanMourik, Journal of Physical Chemistry B, 1997. 101(39): p. 7869-7873.

60. 'Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.' M.E. VanBrederode, W.D. Hoff, I.H.M. VanStokkum, M.L. Groot, and K.J. Hellingwerf, Biophysical Journal, 1996. 71(1): p. 365-380.

61. 'Energy transfer and trapping in isolated photosystem II reaction centers of green plants at low temperature. A study by spectral hole burning.' M.L. Groot, J.P. Dekker, R. vanGrondelle, F.T.H. denHartog, and S. Volker, Journal of Physical Chemistry, 1996. 100(27): p. 11488-11495.

62. 'Purification and spectroscopic characterization of photosystem II reaction center complexes isolated with or without Triton X-100.' C. Eijckelhoff, H. vanRoon, M.L. Groot, R. vanGrondelle, and J.P. Dekker, Biochemistry, 1996. 35(39): p. 12864-12872.

63. 'SUBPICOSECOND TRANSIENT ABSORPTION DIFFERENCE SPECTROSCOPY ON THE REACTION-CENTER OF PHOTOSYSTEM-II - RADICAL PAIR FORMATION AT 77-K.' H.M. Visser, M.L. Groot, F. Vanmourik, I.H.M. Vanstokkum, J.P. Dekker, and R. Vangrondelle, Journal of Physical Chemistry, 1995. 99(41): p. 15304-15309.

64. 'TRIPLET AND FLUORESCING STATES OF THE CP47 ANTENNA COMPLEX OF PHOTOSYSTEM-II STUDIED AS A FUNCTION OF TEMPERATURE.' M.L. Groot, E.J.G. Peterman, I.H.M. Vanstokkum, J.P. Dekker, and R. Vangrondelle, Biophysical Journal, 1995. 68(1): p. 281-290.

65. 'TEMPERATURE-DEPENDENT TRIPLET AND FLUORESCENCE QUANTUM YIELDS OF THE PHOTOSYSTEM-II REACTION-CENTER DESCRIBED IN A THERMODYNAMIC MODEL.' M.L. Groot, E.J.G. Peterman, P.J.M. Vankan, I.H.M. Vanstokkum, J.P. Dekker, and R. Vangrondelle, Biophysical Journal, 1994. 67(1): p. 318-330.

66. 'OPTICAL ANALYSIS OF CHLOROPHYLL TRIPLET-STATES IN PHOTOSYSTEM-II REACTION CENTER AND CP47 COMPLEXES.' P.M. Vankan, M.L. Groot, S.L.S. Kwa, I.H.M. Vanstokkum, J.P. Dekker, and R. Vangrondelle, Photosynthesis Research, 1992. 34(1): p. 119-119.