Publications 2006

Dissertations

Maryam Atakhorrami
High-bandwidth microrheology of complex fluids and biopolymer networks
Promotor: Prof. Christoph F. Schmidt
Copromotor: Prof. Fred C. MacKintosh
February 16, 2006

Iwan A.T. Schaap
Nano-scale mechanics of protein and DNA assemblies. Single molecule imaging and probing by atomic force microscopy
Promotor: Prof. Christoph F. Schmidt
April 12, 2006

Mikhail. J. Korneev
Experimental studies of motor proteins of the kinesin family using single-molecule techniques
Promotor: Prof. Christoph F. Schmidt
July 6, 2006

Publications

Bram van den Broek, Francesco Vanzi, Davide Normanno, Francesco S. Pavone and Gijs J.L. Wuite
Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI
Nucl. Acids. Res. (2006) 34:167

R.T. Dame, M.C. Noom, G.J.L. Wuite
Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
Nature 444, 387-90, 2006

W.S. Klug, R.F. Bruinsma, J.P. Michel, C.M. Knobler, I.L. Ivanovska, C.F. Schmidt, G.J.L. Wuite
Failure of viral shells
Phys. Rev. Letters (2006) 97:228101

S.R. Leliveld, R.T. Dame, G.J.L. Wuite, L. Stitz, C. Korth
The expanded octarepeat domain selectively binds prions and disrupts homomeric prion protein interactions
J. Biol. Chem (2006) 281:3268

M.S. Luijsterburg, M.C. Noom, G.J.L. Wuite, R.T. Dame
The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective
J. Struct. Biol.165, 262-272 (2006).  doi:10.1016/j/jsb.2006.05.006

J. van Mameren, M. Modesti, R. Kanaar, C. Wyman, G.J.L. Wuite, E.J.G. Peterman
Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers
Biophysical Journal, 91(8) (2006)

J.P. Michel, I.L. Ivanovska, M.M. Gibbons, W.S. Klug, C.M. Knobler,  G.J.L. Wuite, C .F. Schmidt
Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and and strength
Proc. Natl. Acad. Sci. USA 103:6184-6189 (2006)

K.C. Vermeulen, J. van Mameren, G.J. Stienen, E.J.G. Peterman, G.J.L. Wuite, C.F. Schmidt
Calibrating bead displacements in optical tweezers using acousto-optic deflectors
Rev. Sci. Instrum. (2006) 77:013704

K.C. Vermeulen, G.J.L. Wuite, G.J.M. Stienen, C.F. Schmidt
Optical trap stiffness in the presence and absence of spherical aberrations 
Appl. Optics (2006) 45:1812